OP said he's using a LCD for sizing the neck - so the INSIDE is perfectly concentric. If the outside is concentric too, then it's good brass - he said it's Lapua.
When you take the case neck and mash it down in a sizing die, the outside is perfectly concentric. The imperfections are being pushed into the inside of the neck. Then you seat a bullet that is encountering those imperfections in neck thickness as it is seated. No matter what brass you use, this is a thing.
Brass was prepped with a Redding body die, and necks were sized using a Lee neck sizing die. I checked my brass after those steps and runout is basically nonexistent.