I've not loaded for a micro-groove 45 cal barrel. The Marlins, both micro-groove and Ballard-rifled, tend to run oversized by at least a few thousandths. In a Marlin 30-30 with micro-groove rifling, .311-312" shoot the best. Anything smaller than .310" is absurdly inaccurate, and leads terribly. In a Ballard 45-70, .460-461" shoot really well. Nothing smaller does. In a Ballard 44 and 444, .433" shoots really well, and anything smaller does not. Those have been my experiences. I'd try whatever to see if it worked, if I were you, but not get too invested until you know whether it shoots. If ordering from Beartooth, I'd order at least a .460", and likely bigger if they would size it so.
For cast bullets, you don't normally size for the bore, you size for the chamber/throat. If the chamber/throat is smaller than the bore, you're likely not going to get good results.